Deletion: Sequence found in MG1655, but not in BW25113
Insertion : Sequence found in BW25113, but not in MG1655
Type | Nucleotide start position in MG1655 genome | Nucleotide end position in MG1655 genome | Nucleotide start position in BW25113 genome | Nucleotide end position in BW25113 genome | Length in MG1655 genome | Length in BW25113 genome | Sequence in MG1655 |
Sequence in BW25113 |
Affected gene(s) | Product(s) | Nucleotide position in MG1655 CDS | Nucleotide position in BW25113 CDS | Nucleotide in MG1655 | Nucleotide in BW25113 | Position in expected protein | Expected amino acid in MG1655 | Expected amino acid in BW25113 | Notes |
Substitution | 66528 | 66528 | 66528 | 66528 | 1 | 1 | T |
C |
araD | L-ribulose-5-phosphate 4-epimerase | - | - | - | - | - | - | - | - |
Deletion | 66533 | 70072 | 66533 | 66559 | 3540 | 27 | TTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTTACATACCGGATGCGGCTACTTAGCGACGAAACCCGTAATACACTTCGTTCCAGCGCAGCGCGTCTTTAAACGCTGGCAGGCGTGTGTCGTTATCAATCACCGTGATTTCAATGTCGTGCATCTCGGCGAATTGGCGCATATCGTTGAGGTTCAGTGCATGGCTGAAGACGGTATGGTGCGCGCCACCAGCGAGGATCCACGCTTCGGAAGCAGTTGGCAGATCCGGTTGCGCTTTCCACAGCGCATTCGCCACCGGCAGTTTCGGCAGGGAGTGCGGTGTTTTCACCGTGTCGATGCAGTTAACCAGTAGACGGTAACGATCGCCGAGATCAATCAAGCTGGCGACAATCGCTGGGCCGGTTTGGGTATTGAAGATCAGGCGGGCAGGATCGTCCTTACCACCAATACCGAGATGCTGAACGTCGAGGATCGGTTTCTCTTCTGCGGCGATCGACGGGCAGACTTCCAGCATATGGGAGCCGAGCACCAGGTCATTACCTTTCTCGAAGTGATAGGTGTAGTCCTCCATAAAGGAGGTGCCGCCCTGCAGACCGGTTGACATCACCTTCATGATGCGAAGCAGGGCGGCAGTTTTCCAGTCGCCTTCGCCCGCAAAGCCGTAACCCTGCTGCATCAGACGCTGTACGGCCAGACCAGGAAGCTGTTTCAGACCGTGCAAATCTTCAAAGGTGGTGGTGAACGCGTGGAAGCCACCTTGTTCCAGGAAACGCTTCATCCCCAGCTCAATACGCGCCGCTTCCAGCACGTTCTGTCGTTTTTTGCCGTGGATTTGTGTGGCAGGCGTCATGGTGTAGCAGCTTTCGTACTCATCGACCAGCGCGTTAACATCGCCGTCGCTGATGGAGTTCACCACCTGCACCAGATCGCCAACCGCCCAGGTATTGACGGAGAAACCGAACTTGATCTGTGCGGCAACTTTATCGCCATCGGTGACCGCCACTTCACGCATGTTATCGCCAAATCGGCAGACTTTCAGATGACGGGTATCCTGTTTAGAGACCGCCTGACGCATCCAGGAGCCGATACGCTCATGGGCTTGTTTATCCTGCCAGTGACCGGTAACCACGGCATGTTGCTGACGCATACGCGCGCCAATGAAGCCGAACTCGCGACCGCCATGTGCAGTCTGGTTCAGGTTCATAAAGTCCATATCGATACTGTCCCACGGCAGCGCCGCGTTGAACTGGGTGTGGAATTGCAGCAACGGTTTGTTGAGCATGGTCAGGCCGTTGATCCACATTTTGGCCGGGGAGAAGGTGTGCAGCCACACCACCAGACCAGCGCAACGATCGTCGTAATTCGCGTCGCGGCAAATAGCGGTGATTTCATCCGGCGTGGTGCCCAGCGGTTTCAACACCAGTTTGCAGGGCAGTTTCGCTTCCGTATTCAGCGCATTAACGACGTGCTCGGCATGTTGGGTGACCTGACGCAGGGTTTCCGGGCCATACAGATGCTGGCTGCCAATGACAAACCACACTTCATAATTATCAAAAATCGTCATTATCGTGTCCTTATAGAGTCGCAACGGCCTGGGCAGCCTGTGCCGGGGCGGAAGTTGGAAGATAGTGTTGTTCGGCGCTCATCGCCCATTGCTGATAGCGGCGATAAAGCTGTTCAAAGCGTTGTGCCTGCTCGCTGCACGGTTGCAGGGTTTTCTCTACCGCACTGGCCATTTTTTGCTGAGCTGATGGGATGTCTGCGTGCACTTTCGCGGCGACGGCAGCAAAAATCGCCGCACCGAGCGCACAGCACTGGTCAGAGGCAACAATTTGCAGCGGGCGATTCAGCACGTCGCAGCAGGCCTGCATAATGACCTGGTTTTTCCGCGCGATGCCGCCCAGTGCCATCACGTTATTAACGGCGATCCCCTGATCGGTAAAGCACTCCATGATTGCGCGTGCGCCAAAGGCGGTGGCAGCAATCAAACCGCCGAACAGCAGCGGAGCGTCGGTAGCGAGGTTAAGATCGGTAATCACCCCTTTCAGGCGTTGGTTAGCGTTCGGTGTGCGGCGGCCGTTAAACCAGTCGAGCACCACCGGCAGGTGATCCAGAGACGGATTTTTGGCCCATGCTTCGGTCAGCGCCGGAAGCAGTTGTTTCTGGCTGGCGTTGATTTGCGTTTTCAGTTCCGGATGCTGGGCGGCAAGCTGTTCCAGCGGCCAGCCGAGTACGCGACCAAACCAGGCGTAGATATCACCAAACGCCGATTGGCCTGCTTCCAGACCGATAAATCCAGGCACCACGCTGCCATCAACCTGACCGCAAATACCTTTAACTGCCCGCTCGCCAACGCTCTGTTTGTCGGCAATCAGAATGTCGCAGGTGGAAGTACCGATAACTTTTACCAGTGCGTTAGGCTGTGCGCCTGCGCCAACTGCGCCCATATGGCAGTCAAACGCGCCGCCGGAAATCACCACGCTTTCAGGCAGGCCGAGACGCTGCGCCCATTCCGGGCATAAGGTGCCCACCGGAATATCGGCAGTCCAAGTGTCAGTGAACAGCGGGGAAGGCAAATGGCGATTGAGGATCGGGTCCAGCTCATCAAAGAAACTGGCTGGCGGCAGGCCGCCCCAGCTTTCGTGCCACAGAGATTTATGCCCGGCGCTGCAACGTCCGCGACGAATATCCTGCGGGCGGGTGGTACCGGAAAGCAGAGCTGGCACCCAGTCGCACAGCTCAATCCACGATGCGGCAGATTGCGCCACGGCGCTGTCCTGGCGAGTCACATGCAGGATTTTTGCCCAGAACCATTCGCTGGAATAAATACCACCAATGTAGCGGGAGTAGTCAACGTTGCCCGGCGCGTGGCACAAACGGGTAATCTCTTCCGCTTCTTCAACCGCAGTGTGGTCTTTCCACAATACGAACATCGCGTTCGGGTTTTCGGCAAACTCCGGGCGCAGCGCCAGCACGTTTCCGTCGGCATCAATCGGTGCGGGCGTCGAGCCGGTACTGTCAACGCCAATCCCGACCACAGCTGCGCGCTGTTCGACGCTAAGCTCTGCAAGCACGGTTTTCAGTGCCGCTTCCATTGACTCAATGTAGTCACGCGGATGATGACGGAACTGGTTATTCGGGGCATCACAAAATTGCCCTTTCTGCCAACGGGGATACCACTCTACGCTGGTGGCGATCTCTTCACCGGTAGCGCAGTCCACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACG |
CCCGAGACCCGCACGCGTCGACCTGCA |
araD ; araA ; araB | araD : L-ribulose-5-phosphate 4-epimerase ; araA : L-arabinose isomerase ; araB : L-ribulokinase | - | - | - | - | - | - | - | Deletion of araA, araB and truncated araD |
Substitution | 70289 | 70289 | 66776 | 66776 | 1 | 1 | G |
T |
Intergenic | - | - | - | - | - | - | - | - | - |
Deletion | 257900 | 258675 | 254387 | 254387 | 776 | 0 | TGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTGTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC |
- |
crl | RNA polymerase holoenzyme assembly factor | - | - | - | - | - | - | - | Mobile element inserted in crl (MG1655) resulting in pseudogene ; not present in BW25113 |
Deletion | 364356 | 366418 | 360067 | 360651 | 2063 | 585 | GTTATCGCTATGACGGAACAGGTATTCGCTGGTCACTTCGATGGTTTGCCCGGATAAACGGAACTGGAAAAACTGCTGCTGGTGTTTTGCTTCCGTCAGCGCTGGATGCGGCGTGCGGTCGGCAAAGACCAGACCGTTCATACAGAACTGGCGATCGTTCGGCGTATCGCCAAAATCACCGCCGTAAGCCGACCACGGGTTGCCGTTTTCATCATATTTAATCAGCGACTGATCCACCCAGTCCCAGACGAAGCCGCCCTGTAAACGGGGATACTGACGAAACGCCTGCCAGTATTTAGCGAAACCGCCAAGACTGTTACCCATCGCGTGGGCGTATTCGCAAAGGATCAGCGGGCGCGTCTCTCCAGGTAGCGAAAGCCATTTTTTGATGGACCATTTCGGCACAGCCGGGAAGGGCTGGTCTTCATCCACGCGCGCGTACATCGGGCAAATAATATCGGTGGCCGTGGTGTCGGCTCCGCCGCCTTCATACTGCACCGGGCGGGAAGGATCGACAGATTTGATCCAGCGATACAGCGCGTCGTGATTAGCGCCGTGGCCTGATTCATTCCCCAGCGACCAGATGATCACACTCGGGTGATTACGATCGCGCTGCACCATTCGCGTTACGCGTTCGCTCATCGCCGGTAGCCAGCGCGGATCATCGGTCAGACGATTCATTGGCACCATGCCGTGGGTTTCAATATTGGCTTCATCCACCACATACAGGCCGTAGCGGTCGCACAGCGTGTACCACAGCGGATGGTTCGGATAATGCGAACAGCGCACGGCGTTAAAGTTGTTCTGCTTCATCAGCAGGATATCCTGCACCATCGTCTGCTCATCCATGACCTGACCATGCAGAGGATGATGCTCGTGACGGTTAACGCCTCGAATCAGCAACGGCTTGCCGTTCAGCAGCAGCAGACCATTTTCAATCCGCACCTCGCGGAAACCGACATCGCAGGCTTCTGCTTCAATCAGCGTGCCGTCGGCGGTGTGCAGTTCAACCACCGCACGATAGAGATTCGGGATTTCGGCGCTCCACAGTTTCGGGTTTTCGACGTTCAGACGTAGTGTGACGCGATCGGCATAACCACCACGCTCATCGATAATTTCACCGCCGAAAGGCGCGGTGCCGCTGGCGACCTGCGTTTCACCCTGCCATAAAGAAACTGTTACCCGTAGGTAGTCACGCAACTCGCCGCACATCTGAACTTCAGCCTCCAGTACAGCGCGGCTGAAATCATCATTAAAGCGAGTGGCAACATGGAAATCGCTGATTTGTGTAGTCGGTTTATGCAGCAACGAGACGTCACGGAAAATGCCGCTCATCCGCCACATATCCTGATCTTCCAGATAACTGCCGTCACTCCAGCGCAGCACCATCACCGCGAGGCGGTTTTCTCCGGCGCGTAAAAATGCGCTCAGGTCAAATTCAGACGGCAAACGACTGTCCTGGCCGTAACCGACCCAGCGCCCGTTGCACCACAGATGAAACGCCGAGTTAACGCCATCAAAAATAATTCGCGTCTGGCCTTCCTGTAGCCAGCTTTCATCAACATTAAATGTGAGCGAGTAACAACCCGTCGGATTCTCCGTGGGAACAAACGGCGGATTGACCGTAATGGGATAGGTCACGTTGGTGTAGATGGGCGCATCGTAACCGTGCATCTGCCAGTTTGAGGGGACGACGACAGTATCGGCCTCAGGAAGATCGCACTCCAGCCAGCTTTCCGGCACCGCTTCTGGTGCCGGAAACCAGGCAAAGCGCCATTCGCCATTCAGGCTGCGCAACTGTTGGGAAGGGCGATCGGTGCGGGCCTCTTCGCTATTACGCCAGCTGGCGAAAGGGGGATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCACGACGTTGTAAAACGACGGCCAGTGAATCCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATT |
CGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTTTCGTGATTGTCACGCTCAAGCCCGTAGTCCCGTTCGAGCGTCGCGCAGAGGTCAGCGAGGGCGCGGTAGGCCCGATACGGCTCATGGATGGTGTTTCGGGTCGGGTGAATCTTGTTGATGGCGATATGGATGTGCAGGTTGTCGGTGTCGTGATGCACGGCACTGACGCGCTGATGCTCGGCGAAGCCAAGCCCAGCGCAGATGCGGTCCTCAATCGC |
lacZ | Beta-D-galactosidase | - | - | - | - | - | - | - | Truncated lacZ and insertion of 4 tandem copies of the rrnB transcriptional terminator |
Substitution | 366519 | 366519 | 360752 | 360752 | 1 | 1 | G | A | lacI | lactose-inducible lac operon transcriptional repressor | 992 | 992 | C | T | 331 | A | V | - |
Insertion | 371758 | 371758 | 365991 | 367213 | 0 | 1223 | - | ATTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTTTGTCAGCCAAAATGAGCATTCGTGCGATAGCTACTGCGCTGAATCGCAGTCCTTCGACGATCTCACGTGAAGTTCAGCGTAATCGGGGCAGACGCTATTACAAAGCTGTTGATGCTAATAACCGAGCCAACAGAATGGCGAAAAGGCCAAAACCGTGCTTACTGGATCAAAATTTACCATTGCGAAAGCTTGTTCTGGAAAAGCTGGAGATGAAATGGTCTCCAGAGCAAATATCAGGATGGTTAAGGCGAACAAAACCACGTCAAAAAACGCTGCGAATATCACCTGAGACAATTTATAAAACGCTGTACTTTCGTAGCCGTGAAGCGCTACACCACCTGAATATACAGCATCTGCGACGGTCGCATAGCCTTCGCCATGGCAGGCGTCATACCCGCAAAGGCGAAAGAGGTACGATTAACATAGTGAACGGAACACCAATTCACGAACGTTCCCGAAATATCGATAACAGACGCTCTCTAGGGCATTGGGAGGGCGATTTAGTCTCAGGTACAAAAAACTCTCATATAGCCACACTTGTAGACCGAAAATCACGTTATACGATCATCCTTAGACTCAGGGGCAAAGATTCTGTCTCAGTAAATCAGGCTCTTACCGACAAATTCCTGAGTTTACCGTCAGAACTCAGAAAATCACTGACATGGGACAGAGGAATGGAACTGGCCAGACATCTAGAATTTACTGTCAGCACCGGCGTTAAAGTTTACTTCTGCGATCCTCAGAGTCCTTGGCAGCGGGGAACAAATGAGAACACAAATGGGCTAATTCGGCAGTACTTTCCTAAAAAGACATGTCTTGCCCAATATACTCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACA |
mhpC | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | - | - | - | - | - | - | - | Mobile element in mhpC (BW25113) resulting in pseudogene ; not present in MG1655 |
Substitution | 503429 | 503429 | 498885 | 498885 | 1 | 1 | C | T | Intergenic | - | - | - | - | - | - | - | - | - |
Substitution | 705013 | 705013 | 700469 | 700469 | 1 | 1 | T | C | nagE | N-acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components | 1070 | 1070 | T | C | 357 | L | S | - |
Deletion | 1299495 | 1300693 | 1294951 | 1294951 | 1199 | 0 | CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTTATCCCTGGATAGCGCCTTGCCGGACCGCACCACCATCATGAATTTCCGCCACCTGCTGGAGCAGCATCAACTGGCCCGCCAATTGTTCAAGACCATCAATCGCTGGCTGGCCGAAGCAGGCGTCATGATGACTCAAGGCACCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCATGAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTGGTCACCACCGCGGCCAACGAGCATGACCTCAATCAGCTGGGTAATCTGCTGCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCCGAGGTGGATGTGGACTGGCTGATCGCCGAGCGCCCCGGCAAGGTAAGAACCTTGAAACAGCATCCACGCAAGAACAAAACGGCCATCAACATCGAATACATGAAAGCCAGCATCCGGGCCAGGGTGGAGCACCCATTTCGCATCATCAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC |
- | Intergenic | - | - | - | - | - | - | - | - | Mobile element in an intergenic region (MG1655) ; not present in BW25113 |
Substitution | 1337394 | 1337394 | 1331651 | 1331651 | 1 | 1 | A | G | acnA | aconitate hydratase 1; aconitase A | 1564 | 1564 | A | G | 522 | S | G | - |
Substitution | 1652331 | 1652331 | 1646588 | 1646588 | 1 | 1 | T | C | intQ | Qin prophage; putative site-specific recombinase | 820 | 820 | T | C | 274 | F | L | - |
Deletion | 1978495 | 1979270 | 1972752 | 1972752 | 776 | 0 | CATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTGTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC |
- | Intergenic | - | - | - | - | - | - | - | - | Mobile element in an intergenic region (MG1655) ; not present in BW25113 |
Deletion | 2173363 | 2173364 | 2166844 | 2166844 | 2 | 0 | CC | - | gatC | subunit of galactitol PTS permease | 915-916 | 915 | GG | - | - | - | - | Frameshift in gatC (MG1655) resulting in pseudogene ; not present in BW25113 |
Deletion | 2521007 | 2521126 | 2514486 | 2514486 | 120 | 0 | ACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCA |
- | valX | tRNA-Val | - | - | - | - | - | - | - | Deletion of valX (BW25113) |
Substitution | 2844010 | 2844010 | 2837369 | 2837369 | 1 | 1 | G | T | hycG | subunit of hydrogenase 3 and formate hydrogenlyase complex | 201 | 201 | C | A | 67 | R | R | - |
Substitution | 3110421 | 3110421 | 3103780 | 3103780 | 1 | 1 | C | A | pheV | tRNA-Phe | - | - | - | - | - | - | - | - |
Substitutions | 3424235 | 3424237 | 3417594 | 3417596 | 3 | 3 | ATC | CAT | rrlD | 23S ribosomal RNA of rrnD operon | - | - | - | - | - | - | - | - |
Insertion | 3560456 | 3560456 | 3553815 | 3553815 | 0 | 1 | - | G | glpR | repressor of the glp operon | 151 | 151 | - | C | - | - | - | Frameshift in glpR (MG1655) resulting in pseudogene ; not present in BW25113 |
Substitution | 4093770 | 4093770 | 4087130 | 4087130 | 1 | 1 | C | T | rhaD | rhamnulose-1-phosphate aldolase | - | - | - | - | - | - | - | - |
Deletion | 4093991 | 4097451 | 4087351 | 4087379 | 3461 | 29 | TTTTACGATGCCTAAGTTAGCCGCAGGATCAAGCTGGACGTTACGGAAGAATTTGCCCGAGCCGGTGACAATAAACGGTGTATTTGCCAGTAAAGGCATGGGCTGGCTGAGCGGGATATAGCGCGGTTGTTGGTGGAAATTGTCGTGATATGGTGCGATATCGGCGTCATCCAGGCGTAGCGTCAGGTTGCCGCCGTTGCGCTCATCCCAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTGTTGCCGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAGTGTTTACCCGCGGCGACTCAAAATTTCTTTCTCATAAGCCCGCACGCTCTCCAGCCATTCGCTACCTGCTGGCGTATCGTGACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCAGGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGCCTGGGTTTCATCATCCAGCAGCACTACGTGATCGCTGTCCCAGCGAACCGGACGGCTGACGTGCAGCAGCAACTGCGGCACATACAGCATGGCGGCGGAAATCTTGTCGGAAATCACTTCAGTCGGGTGGAAGTGCCCGGCGTCCAGGCACAGCGCAGTCTGGCGGCTGGTGGCATACCCCATGTAAAACTCATTGGAGCCAACCGTGTAGCTCTCTGCGCCAATGCCAAACAATTTGCTCTCAACGGCGTCGATATGGTGCGCAGGGTTTAGCTTCTCGCTGATCACCTCATCCAGTGCTGCCAGCAGACGCTGACGCGGGGCGAGACGGTCAACGGTGATATCTTTCATACCATCCGGGATCCAGATGTTCATCACCGATGGTGTGCCGAGTTGCTCGCCAAAATAGGCCGAAACGCGACGGCTGGCTTTGCAGTGATCAATCCAGAACTGGCGAATGCTGTCGTCGGCATGGGAAAGCGTAAAGCCATCGGCGCTTAGCGGATGCGAAAAGCAGGAGGGGTTAAAATCCAGACCGAGCTGATTGGCTTTCGCCCATTCAACCCAGTTTTTGAAGTGCTCTGGTTTGATCTGGTCGCGCGAGACTGGCGTATCTGATTCCAGATAGATGGCATGTAAATTAAGCCGTTTCGGCCCCGGAATCAGCCGCATAGCCTGTTCCAGATCGGCACGTAGCTCACTGGCATTACGCGCTTTGCCCGGATAATTGCCTGTGGCCTGAATCCCCCCGGTCAGCGAACCTTCCGGGTTTTCAAAACCGGAAACATCATCGCCCTGCCAGCAGTGCATTGAAACGGGTAAACGATCAAGTTGGCGCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGGGCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCGAATACCGCAGGCATCGGCGCATAGCTGGTTGAGCAGCGTGTTCTGGCAGCCTCCGCCGACAATATGCAGTTGCGAGAAATCTTCACCGCGCAGCTGCGCCAGCTCATGCAACACATCGGCATACAGCAGCGCCAGACTGTCGAAAATGCAGCGCGCCAGTTCAGCATCACTTTCCGGGATCGGTTGCGCCGTTTCCCGACACGCAGCCTGAATTTCGCTGCACATCGTCTCAGGATTAATAAAGCGATCGTCATTGGGATTGATAATGAAGCGGCAAGCCGGAAGTGCCTGTGTCGCGGAGATAAGCGCCGGAAGATCGTTGATTTGCTGCTCCTGAAGCACTCGCTGAAGCAGCCATAAGCCCATAATATTTTTCAGCACCCGATAGCGACCTTCCGCCCCGCCTTCATTGGTGATGTTGGCTGCCAGTGCCGTGTCATTGGTAAATGGCGTCTGGCTTTCGAAGCCCATCAATGACCAGGTGCCAGAAGAGAGATAAGCAGCACGTGAGCCGTTTAACGGCGAGGCGATAACCGCGCTGGCGGTATCATGGCTGGCAACGGCGACCACTGGAATCTCATTACCCTGCGGGCAAATCCAGTGACCTATGACATTACCCGGATGCGTCGGGCGACCAAACCAGGCTTTGTTGGCCCCGCTCCACGCCAGTAGCGACTCGTCCCAGTCGTCGCTATTGATATTGACCAGTTGCGTGGTCGTGGCGTTGGTATATTCCCAGTTCATCTTGCCGGTCAGGCGATAACTGAAGTAATCCGGCATCAGCAGAGCGTGAGCAATGTGTGGAATAAGTTCAGGTTGTTGCTCCGTCAGCGCACGCAACTGATAAAGCGTATTGAAGGGCAGAAACTGGATGCCGCTACGTTGATAAATATCGCGTTTGCCGAGTTGTTGTTGTGCCTGCGCCATTAGGCCATTGGTGCGGCTATCGCGATAAGCAACGGGCAGGCCCACACGCTGACCCTGTTGGTCGAGCAGCACAAAGTCCACGCCCCAGGTATCAATCCCAATGCTATCGATACGAATCCCTTCCTCGCACACCTTGTTTAATCCAAGGCGAATGGCACTTTCAAGGCTATCCACATCCCAGGTGACATAGCCGTTCTGACTATGCAGCCCATTGTTAAAACGATGGATTTCGCGCAGCGTCAGGCTGCGGCATTCACGCTCGTAACGCGCCAGCATCACGCGCCCACTGGATGCGCCGAGATCGACGGCGACACAATTGCGAAAGGTCATAAT |
GCATGCGGATCCTCTAGAGTCGACATATG |
rhaD ; rhaA ; rhaB | rhaD : rhamnulose-1-phosphate aldolase ; rhaA : L-rhamnose isomerase ; rhaB : rhamnulokinase | - | - | - | - | - | - | - | Deletion of rhaA, rhaB and truncated rhaD |
Substitution | 4161248 | 4161248 | 4151176 | 4151176 | 1 | 1 | G | T | fabR | transcriptional repressor of fabA and fabB | 182 | 182 | G | T | 61 | G | V | - |
Substitution | 4164123 | 4164123 | 4154051 | 4154051 | 1 | 1 | C | G | btuB | vitamin B12/cobalamin outer membrane transporter | 485 | 485 | C | G | 162 | A | G | - |
Substitution | 4296268 | 4296268 | 4286196 | 4286196 | 1 | 1 | T | C | Intergenic | - | - | - | - | - | - | - | - | - |
Deletion | 4296282 | 4296392 | 4286210 | 4286210 | 111 | 0 | TCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACCGCATCCGACA |
- | Intergenic | - | - | - | - | - | - | - | - | - |
Substitution | 4474834 | 4474834 | 4464651 | 4464651 | 1 | 1 | A | G | Intergenic | - | - | - | - | - | - | - | - | - |
Substitution | 4585480 | 4585480 | 4575297 | 4575297 | 1 | 1 | G | A | hsdR | endonuclease R Type I restriction enzyme | 1336 | 1336 | C | T | 446 | Q | * | Substitution in hsdR (BW25113) resulting in pseudogene (premature stop codon) |
Substitution | 4602509 | 4602509 | 4592326 | 4592326 | 1 | 1 | C | T | yjjP | DUF1212 family inner membrane protein | 350 | 350 | G | A | 117 | W | * | Substitution in yjjP (BW25113) resulting in pseudogene (premature stop codon) |
Substitution | 4616669 | 4616669 | 4606486 | 4606486 | 1 | 1 | G | T | yjjI | DUF3029 family protein, putative glycine radical enzyme | 397 | 397 | C | A | 133 | L | I | - |